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Mycobacterium africanum GM041182

GenBank Accession
Locus Tag
Gene Object ID
Gene Product Name
Amino Acid Sequence Length
COG
Pfam
Most likely cleavage site
Cleavage at
Reliability score
GC%
GC3s%
Nc
CAI
YP_004722122
MAF_04130
651023908
amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-) (IMGterm)
328
T E
pfam00497
 
1 - 25 
[LAS-CG]  
0.974
67.5
88.7
37.54
0.731
YP_004722143
MAF_04340
651023929
putative periplasmic superoxide dismutase [Cu-Zn] SODC (EC:1.15.1.1)
240
P
pfam00080
 
1 - 32 
[LSA-CS]  
0.964
67.4
80.9
38.84
0.651
YP_004722240
MAF_05330
651024026
putative thioredoxin protein (thiol-disulfide interchange protein)
216
C O
pfam00578
 
1 - 30 
[LTG-CS]  
0.734
67.9
82
40.59
0.634
YP_004722314
MAF_06110
651024101
putative conserved lipoprotein LPQO
316
pfam07485
 
1 - 22 
[LTA-CA]  
0.998
69.7
86.4
34.39
0.706
YP_004722542
MAF_08440
651024337
putative lipoprotein LPQQ
214
 
1 - 22 
[TTA-CS]  
0.586
62.3
74.4
44.67
0.591
YP_004722553
MAF_08550
651024348
putative OXIDASE
504
Q
pfam00394<<>>pfam07731<<>>pfam07732
 
12 - 34 
[LAA-CA]  
0.906
64.9
80.2
38.5
0.638
YP_004722633
MAF_09370
651024429
phosphate ABC transporter substrate-binding protein, PhoT family (TC 3.A.1.7.1) (IMGterm)
370
P
 
1 - 22 
[LSA-CG]  
1
62.5
78.6
42.93
0.609
YP_004722637
MAF_09410
651024433
phosphate ABC transporter substrate-binding protein, PhoT family (TC 3.A.1.7.1) (IMGterm)
370
P
 
1 - 22 
[LTA-CG]  
1
61.6
77.6
43.93
0.587
YP_004722638
MAF_09430
651024434
phosphate ABC transporter substrate-binding protein, PhoT family (TC 3.A.1.7.1) (IMGterm)
374
P
 
1 - 23 
[AAG-CG]  
1
64.6
81.6
45.27
0.636
YP_004722666
MAF_09710
651024462
putative lipoprotein LPRP
224
 
1 - 21 
[LAG-CI]  
0.996
64.1
76.7
43.66
0.576
YP_004722710
MAF_10160
651024507
hypothetical protein
567
 
1 - 26 
[LNG-CS]  
0.737
65
80.4
40.81
0.63
YP_004722719
MAF_10260
651024516
putative conserved lipoprotein LPQT
226
pfam10738
 
11 - 29 
[AVA-CG]  
0.953
62.1
77.9
43.12
0.61
YP_004722770
MAF_10770
651024569
putative lipoprotein LPQV
139
 
1 - 25 
[VAG-CS]  
0.964
70.3
78.2
40.51
0.62
YP_004722874
MAF_11840
651024673
putative conserved lipoprotein LPQW
635
E
pfam00496
 
1 - 27 
[LAG-CT]  
0.718
67.2
82.5
41.11
0.639
YP_004722944
MAF_12540
651024743
carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-) (IMGterm)
468
G
pfam01547
 
1 - 25 
[AAA-CG]  
0.506
66.2
81.1
43.08
0.602
YP_004722953
MAF_12630
651024752
putative lipoprotein LPQZ
286
M
pfam04069
 
1 - 22 
[VAG-CS]  
1
70.2
84.2
38.3
0.661
YP_004722961
MAF_12710
651024760
putative lipoprotein LPRE
202
 
12 - 28 
[LTG-CG]  
0.947
67
80.8
39.32
0.625
YP_004722980
MAF_12910
651024779
putative lipoprotein LPRA
244
pfam07161
 
1 - 24 
[IGG-CS]  
0.997
62.6
79.7
41.8
0.6
YP_004722984
MAF_12950
651024783
putative lipoprotein LPRB
185
pfam12079
 
1 - 24 
[VAG-CS]  
0.999
62.9
80.8
39.89
0.666
YP_004722985
MAF_12960
651024784
putative lipoprotein LPRC
180
pfam12079
 
1 - 20 
[LTG-CT]  
0.998
65.7
85
35.7
0.714
YP_004723079
MAF_13920
651024883
putative conserved lipoprotein LPRF
261
pfam07161
 
14 - 38 
[VAG-CG]  
0.954
64.4
82.7
43.89
0.634
YP_004723120
MAF_14330
651024924
putative conserved lipoprotein LPRG
236
pfam07161
 
1 - 26 
[VAG-CS]  
0.999
65.3
83.9
37.95
0.659
YP_004723127
MAF_14400
651024931
putative lipoprotein LPRH
228
 
1 - 27 
[LAA-CT]  
0.828
66.4
77.1
44.64
0.578
YP_004723254
MAF_15680
651025058
putative lipoprotein lprI
197
S
pfam07007<<>>pfam09864
 
1 - 15 
[LSA-CA]  
0.96
63.6
74.9
44.11
0.6
YP_004723373
MAF_16940
651025178
putative conserved lipoprotein DSBF
182
O C
pfam08534
 
1 - 19 
[VTA-CG]  
0.971
63.9
72.2
46.39
0.554
YP_004723552
MAF_18790
651025358
putative molybdate-binding lipoprotein MODA
261
P
pfam01547
 
1 - 21 
[LVA-CG]  
0.991
63
72.7
44.1
0.558
YP_004723576
MAF_19030
651025382
putative conserved lipoprotein LPPE
140
 
1 - 21 
[LSA-CG]  
0.998
61.4
74.5
41.39
0.551
YP_004723606
MAF_19340
651025412
phospholipid-binding protein, PBP family (IMGterm)
201
R
pfam01161
 
1 - 23 
[LGG-CG]  
0.993
68.7
72.1
42.8
0.512
YP_004723616
MAF_19440
651025422
putative conserved lipoprotein LPPF
423
E
 
1 - 20 
[VIG-CS]  
0.989
63
77
43.1
0.619
YP_004723812
MAF_21500
651025618
putative conserved lipoprotein LppL
358
 
1 - 25 
[VAG-CS]  
0.428
65.8
74.3
41
0.572
YP_004723937
MAF_22800
651025746
putative lipoprotein LPPN
175
 
1 - 20 
[LAA-CS]  
0.913
63.8
70
45.6
0.524
YP_004723954
MAF_22980
651025763
putative conserved lipoprotein lppO
171
 
1 - 28 
[LPA-CS]  
0.409
64.1
68.5
52.92
0.491
YP_004723997
MAF_23420
651025807
putative lipoprotein LPPP
175
 
1 - 30 
[ASG-CA]  
0.719
62.5
73.7
45.17
0.558
YP_004724008
MAF_23540
651025819
putative conserved lipoprotein LPPQ
139
 
11 - 31 
[LSA-CG]  
0.901
64.7
74.1
42.96
0.584
YP_004724072
MAF_24180
651025883
putative conserved lipoprotein LPPR
251
 
1 - 19 
[AAG-CT]  
0.669
64.7
74.2
44.91
0.571
YP_004724255
MAF_26020
651026071
putative conserved lipoprotein
557
E
pfam00496
 
1 - 30 
[LTA-CS]  
0.503
66.7
81.1
43.2
0.624
YP_004724437
MAF_27890
651026257
putative lipoprotein LPPU
171
 
1 - 18 
[ATG-CS]  
1
66.9
87.3
38.54
0.704
YP_004724449
MAF_28010
651026269
putative conserved lipoprotein LPPV
187
S
 
1 - 18 
[ATG-CG]  
0.999
66.5
85.2
37.32
0.717
YP_004724494
MAF_28480
651026314
putative conserved transmembrane alanine rich protein
181
 
17 - 36 
[VSA-CG]  
0.914
69.6
73.5
45.09
0.53
YP_004724524
MAF_28780
651026344
cell surface lipoprotein MPT83 (lipoprotein P23)
220
M
pfam02469
 
1 - 24 
[LAG-CS]  
0.984
63.8
76.1
41.11
0.588
YP_004724553
MAF_29090
651026373
putative conserved alanine rich lipoprotein LPPW
314
 
1 - 22 
[VAG-CE]  
0.928
66.2
78.4
44.03
0.593
YP_004724595
MAF_29510
651026415
putative conserved lipoprotein LPPX
233
pfam07161
 
1 - 26 
[LSG-CS]  
0.997
60.1
69.2
52.86
0.493
YP_004724648
MAF_30050
651026470
putative conserved lipoprotein LPPY
321
pfam07485
 
1 - 23 
[LAA-CS]  
0.998
64.8
80.1
41.5
0.638
YP_004724683
MAF_30400
651026505
hypothetical protein
182
 
1 - 24 
[PTA-CS]  
0.601
60.8
81.5
35.26
0.678
YP_004724694
MAF_30510
651026516
putative FEIII-dicitrate-binding periplasmic lipoprotein FECB
359
P
pfam01497
 
1 - 19 
[SSG-CG]  
1
67.5
79.4
39.16
0.651
YP_004724896
MAF_32550
651026721
putative conserved lipoprotein LPQB
583
pfam10646<<>>pfam10647
 
1 - 15 
[LAG-CA]  
0.971
67.6
80.6
42.11
0.603
YP_004724948
MAF_33090
651026773
putative esterase lipoprotein LPQC
304
Q
pfam10503
 
1 - 18 
[LAG-CG]  
0.773
66.2
77.2
45.65
0.596
YP_004725140
MAF_35080
651026965
putative MCE-family lipoprotein LPRN (MCE-family lipoprotein MCE4E)
384
Q
pfam02470
 
1 - 20 
[LAG-CQ]  
0.999
62.3
82.2
41.07
0.639
YP_004725217
MAF_35890
651027042
putative conserved lipoprotein LPPH
237
 
1 - 20 
[AAG-CT]  
0.943
61.3
73.3
46.28
0.583
YP_004725225
MAF_35970
651027050
putative conserved lipoprotein LPQE
182
 
1 - 29 
[LSG-CG]  
0.92
63.6
81.5
42.21
0.642
YP_004725234
MAF_36060
651027059
putative conserved lipoprotein LPQF
452
V
 
1 - 31 
[ASG-CS]  
0.858
65
77.1
41.32
0.599
YP_004725299
MAF_36730
651027125
putative periplasmic dipeptide-binding lipoprotein DPPA
541
E
pfam00496
 
1 - 24 
[VAG-CG]  
0.934
64.9
82.8
38.33
0.676
YP_004725399
MAF_37760
651027228
19 KDa lipoprotein antigen precursor Lpq
159
pfam05481
 
1 - 21 
[LSG-CS]  
1
64.8
79
42.36
0.599

 

Genbank accession no: An accession number is a unique identifier given to a DNA or protein sequence record to allow for tracking of different versions of that sequence record.
Gene object id: Gene object id is the ID given to a DNA or protein sequence to identification.
Locus tag: Locus_tags are identifiers that are systematically applied to every gene in a genome. Locus_tags are systematically added to genes within a genome.
COG categories: "COG" stands for Cluster of Orthologous Groups of proteins.  The proteins that comprise each COG are assumed to have evolved from an ancestral protein, and are therefore either orthologs or paralogs.   
Pfam: Pfam is a database of protein families, where families are sets of protein regions that share a significant degree of sequence similarity, thereby suggesting homology.
Cleavage site: The site in a protein chain where the cleaves occur between signal peptide and mature protein
Reliability Score: Reliability score takes value in the range 0-1 and it is a measure of the reliability of the cleavage prediction, useful in many situations.
GC3: Frequency of guanine and cytocine at third position of the synonymous codon.
NC:  NC (Effective number of Codon) serve as a measure of general codon bias. 
CAI calculator: CAI (Codon Adaptation Index) calculator is the way to identify the directional synonymous codon usage bias.