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Mycobacterium africanum GM041182

GenBank Accession
Locus Tag
Gene Object ID
Twin argenine 
Hydrophobic region
Gene Product Name
Amino Acid Sequence Length
Pfam
COG
GC%
GC3s%
Nc
CAI
YP_004721924
MAF_02040
651023709
 
TRRRLL
 
LLAVLIALALPGAAVALLA
hypothetical protein
136
67.4
81.8
40.6
0.629
YP_004722031
MAF_03170
651023816
 
DRRRMM
 
MMMMAGFGALAAALPAPTAWA
putative beta-1,3-glucanase precursor
294
pfam00722
G
65.8
78.8
41.38
0.627
YP_004722122
MAF_04130
651023908
 
TRRALL
 
AAAPLAPLALAMVLASC
amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-) (IMGterm)
328
pfam00497
E T
67.5
88.7
37.54
0.731
YP_004722486
MAF_07860
651024277
 
SRRAVL
 
AVLGLGAGTVLGATSAYAI
putative conserved exported protein
303
R
69.3
79.4
40.17
0.579
YP_004722553
MAF_08550
651024348
 
SRRGFL
 
GFLGAGIASGFALAACAS
putative OXIDASE
504
pfam00394<<>>pfam07731<<>>pfam07732
Q
64.9
80.2
38.5
0.638
YP_004723508
MAF_18350
651025314
 
RRRTAM
 
TAMAAAGLGAALGLGILLVPTV
hypothetical protein
143
63.4
70.6
45.99
0.52
YP_004723723
MAF_20560
651025529
 
ERRSLL
 
GAGALTAASLAPWAAGCA
carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-) (IMGterm)
439
pfam01547
G
63.7
76.4
43.45
0.59
YP_004723750
MAF_20830
651025556
 
GRRELL
 
LLVAMAMLVSVTGCA
class A beta-lactamase BLAC (EC:3.5.2.6)
307
pfam00144
V
66.1
76.8
44.53
0.575
YP_004724017
MAF_23630
651025828
 
TRRQFF
 
AAAATTAGAFMSLAGPI
putative membrane-associated phospholipase C 2 PLCB (EC:3.1.4.3)
512
pfam04185
M
62.8
79
44.21
0.6
YP_004724193
MAF_25400
651026009
 
SRRDVL
 
FAAATPGVLGLGVVASSL
hypothetical protein
240
pfam08924<<>>pfam10518
66
81.8
39.8
0.655
YP_004724484
MAF_28380
651026304
 
NRRQFL
 
QFLALAAAAAGVTAGCAGMGGG
carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-) (IMGterm)
436
pfam01547
G
64.6
78.7
41.14
0.622
YP_004724494
MAF_28480
651026314
 
SRRGVL
 
GVLAGGAALAALGVVSACG
putative conserved transmembrane alanine rich protein
181
69.6
73.5
45.09
0.53
YP_004724621
MAF_29780
651026441
 
NRRTLL
 
TLLWLSAIAALALVVAYQTLGS
putative conserved membrane or exported protein
237
pfam09352
S
65.5
78.9
37.33
0.639
YP_004724746
MAF_31030
651026569
 
HRRTAL
 
LPLLLAAGTVLGQAP
hypothetical protein
379
G
64.3
76.2
43.32
0.596

 

Genbank accession no: An accession number is a unique identifier given to a DNA or protein sequence record to allow for tracking of different versions of that sequence record.
Gene object id: Gene object id is the ID given to a DNA or protein sequence to identification.
Locus tag: Locus_tags are identifiers that are systematically applied to every gene in a genome. Locus_tags are systematically added to genes within a genome.
COG categories: "COG" stands for Cluster of Orthologous Groups of proteins.  The proteins that comprise each COG are assumed to have evolved from an ancestral protein, and are therefore either orthologs or paralogs.   
Pfam: Pfam is a database of protein families, where families are sets of protein regions that share a significant degree of sequence similarity, thereby suggesting homology.
Twin argenine: The twin-arginine translocation pathway (Tat pathway) is a protein export, or secretion pathway found in plantsbacteria, and archaea. The Tat pathway serves to actively translocate folded proteins across a lipid membrane bilayer.
Hydrophobic region: The hydrophobic regions of a protein of a lipid molecule to associate away from water is a main driving force in the folding of proteins into their dimensional configuration.
GC3: Frequency of guanine and cytocine at third position of the synonymous codon.
NC:  NC (Effective number of Codon) serve as a measure of general codon bias. 
CAI calculator: CAI (Codon Adaptation Index) calculator is the way to identify the directional synonymous codon usage bias.

 
 
 
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